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[ Quellcode: r-cran-alakazam  ]

Paket: r-cran-alakazam (1.1.0-1 und andere)

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Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

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r-cran-alakazam herunterladen

Download für alle verfügbaren Architekturen
Architektur Version Paketgröße Größe (installiert) Dateien
amd64 1.1.0-1+b1 2.484,2 kB2.940,0 kB [Liste der Dateien]
arm64 1.1.0-1 2.479,4 kB2.931,0 kB [Liste der Dateien]
armel 1.1.0-1 2.480,7 kB2.926,0 kB [Liste der Dateien]
armhf 1.1.0-1 2.480,1 kB2.902,0 kB [Liste der Dateien]
i386 1.1.0-1 2.486,4 kB2.942,0 kB [Liste der Dateien]
mips64el 1.1.0-1 2.479,4 kB2.953,0 kB [Liste der Dateien]
mipsel 1.1.0-1 2.478,6 kB2.946,0 kB [Liste der Dateien]
ppc64el 1.1.0-1 2.484,4 kB2.959,0 kB [Liste der Dateien]
s390x 1.1.0-1 2.479,6 kB2.939,0 kB [Liste der Dateien]