[ Source: r-bioc-purecn ]
Paketti: r-bioc-purecn (1.20.0+dfsg-3)
Links for r-bioc-purecn
Debian-palvelut:
Imuroi lähdekoodipaketti r-bioc-purecn:
- [r-bioc-purecn_1.20.0+dfsg-3.dsc]
- [r-bioc-purecn_1.20.0+dfsg.orig.tar.xz]
- [r-bioc-purecn_1.20.0+dfsg-3.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [bioconductor.org]
Samankaltaisia paketteja:
copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.
Muut pakettiin r-bioc-purecn liittyvät paketit
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- dep: r-api-4.0
- näennäispaketti, jonka toteuttaa r-base-core
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- dep: r-api-bioc-3.12
- näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
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- dep: r-base-core (>= 4.0.3-1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-biocgenerics
- generic functions for Bioconductor
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- dep: r-bioc-biostrings
- GNU R string objects representing biological sequences
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- dep: r-bioc-dnacopy
- R package: DNA copy number data analysis
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- dep: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- dep: r-bioc-genomicranges (>= 1.20.3)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.2.1)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rhdf5
- BioConductor HDF5 interface to R
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- dep: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- dep: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-summarizedexperiment
- BioConductor assay container
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- dep: r-bioc-variantannotation (>= 1.14.1)
- BioConductor annotation of genetic variants
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- dep: r-cran-data.table
- GNU R extension of Data.frame
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- dep: r-cran-futile.logger
- logging utility for GNU R
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- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- dep: r-cran-gridextra
- GNU R package with extensions for the grid package
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- dep: r-cran-matrix
- GNU R package of classes for dense and sparse matrices
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- dep: r-cran-rcolorbrewer
- GNU R package providing suitable color palettes
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- dep: r-cran-vgam
- GNU R package for estimating vector generalized additive models
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- rec: r-cran-testthat
- GNU R testsuite
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- sug: r-bioc-biocparallel
- BioConductor facilities for parallel evaluation
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-org.hs.eg.db
- genome-wide annotation for Human
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- sug: r-cran-covr
- test coverage for GNU R packages
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- sug: r-cran-jsonlite
- Robust, High Performance JSON Parser and Generator for R
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-optparse
- GNU/R Command line option parser
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- sug: r-cran-pscbs
- R package: Analysis of Parent-Specific DNA Copy Numbers
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
Imuroi r-bioc-purecn
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| all | 5,180.1 kt | 8,174.0 kt | [tiedostoluettelo] |