Paketti: mindthegap (2.2.2-2)

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Samankaltaisia paketteja:

performs detection and assembly of DNA insertion variants in NGS read datasets

Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. It takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gaps between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file.

Muut pakettiin mindthegap liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.14) [amd64]

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.8) [i386, mips64el, s390x]
dep: libgatbcore3 (>= 1.4.2+dfsg)

dynamic library of the Genome Analysis Toolbox
dep: libgcc-s1 (>= 3.0) [ei i386]

GCC:n apukirjasto

dep: libgcc-s1 (>= 4.2) [i386]
dep: libhdf5-103-1

HDF5 C runtime files - serial version
dep: libstdc++6 (>= 9)

GNU standardi C++ -kirjasto, versio 3

Imuroi mindthegap

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	227.5 kt	1,004.0 kt	[tiedostoluettelo]
arm64	204.1 kt	944.0 kt	[tiedostoluettelo]
i386	246.1 kt	1,031.0 kt	[tiedostoluettelo]
mips64el	190.4 kt	1,087.0 kt	[tiedostoluettelo]
ppc64el	225.7 kt	1,112.0 kt	[tiedostoluettelo]
s390x	207.3 kt	996.0 kt	[tiedostoluettelo]