Package: libseqlib2 (1.2.0+dfsg-11 and others) [debports]
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C++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.
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Download libseqlib2
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| m68k (unofficial port) | 1.2.0+dfsg-11+b2 | 150.6 kB | 467.0 kB | [list of files] |