Package: ariba (2.14.6+ds-2 and others) [debports]
Links for ariba
Debian Resources:
Download Source Package :
Not foundMaintainers:
External Resources:
- Homepage [github.com]
Similar packages:
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
Other Packages Related to ariba
|
|
|
|
-
- dep: bowtie2 (>= 2.1.0)
- ultrafast memory-efficient short read aligner
-
- dep: cd-hit
- suite of programs designed to quickly group sequences
-
- dep: fastaq (>= 3.12.0)
- FASTA and FASTQ file manipulation tools
-
- dep: libc6 (>= 2.4)
- Biblioteca de C de GNU: Bibliotecas compartidas
also a virtual package provided by libc6-udeb
-
- dep: libfml0 (>= 0.1-4~)
- library for assembling Illumina short reads in small regions
-
- dep: libgcc-s2 (>= 4.2.1)
- Biblioteca de ayuda de GCC
-
- dep: libminimap0 (>= 0.2)
- library for approximate mapping of long biosequences
-
- dep: libstdc++6 (>= 5.2)
- biblioteca estándar de C++ de GNU v3
-
- dep: mash
- fast genome and metagenome distance estimation using MinHash
-
- dep: mummer
- Alineación eficiente de secuencias de genomas completos
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.11)
- dep: python3 (>= 3.9~)
-
- dep: python3-biopython
- Python3 library for bioinformatics
-
- dep: python3-bs4
- error-tolerant HTML parser for Python 3
-
- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
-
- dep: python3-pymummer (>= 0.10.2)
- Python 3 interface to MUMmer
-
- dep: python3-pysam (>= 0.9.1)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
-
- dep: zlib1g (>= 1:1.1.4)
- Biblioteca de compresión, ejecutables
-
- sug: spades
- genome assembler for single-cell and isolates data sets
Download ariba
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| m68k (unofficial port) | 2.14.6+ds-2+b1 | 1,910.0 kB | 20,567.0 kB | [list of files] |