Package: spaln (3.0.2+dfsg-2 and others)

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splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

Other Packages Related to spaln

depends

recommends

suggests

enhances

dep: libc6 (>= 2.38) [riscv64]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.39) [not riscv64]
dep: libgcc-s1 (>= 3.0) [riscv64]

GCC support library

dep: libgcc-s1 (>= 3.3.1) [not riscv64]
dep: libgsl28 (>= 2.8+dfsg)

GNU Scientific Library (GSL) -- library package
dep: libstdc++6 (>= 5)

GNU Standard C++ Library v3
dep: spaln-data

splicing-aware transcript-alignment to genomic DNA (data)
dep: zlib1g (>= 1:1.2.0.2)

compression library - runtime

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Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
amd64	3.0.2+dfsg-2+b1	567.9 kB	1,945.0 kB	[list of files]
arm64	3.0.2+dfsg-2+b1	510.3 kB	2,231.0 kB	[list of files]
mips64el	3.0.2+dfsg-2+b1	541.2 kB	2,360.0 kB	[list of files]
ppc64el	3.0.2+dfsg-2+b1	573.3 kB	2,616.0 kB	[list of files]
riscv64	3.0.2+dfsg-2+b1	656.4 kB	3,350.0 kB	[list of files]
s390x	3.0.2+dfsg-2+b1	582.8 kB	2,061.0 kB	[list of files]