[ Source: spaln ]
Package: spaln (2.4.13f+dfsg-1)
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- Homepage [github.com]
Similar packages:
splicing-aware transcript-alignment to genomic DNA
Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.
spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.
Other Packages Related to spaln
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libstdc++6 (>= 5)
- GNU Standard C++ Library v3
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- dep: spaln-data
- splicing-aware transcript-alignment to genomic DNA (data)
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- dep: zlib1g (>= 1:1.2.0.2)
- compression library - runtime
Download spaln
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 338.7 kB | 821.0 kB | [list of files] |
| arm64 | 304.6 kB | 835.0 kB | [list of files] |
| mips64el | 323.1 kB | 1,047.0 kB | [list of files] |
| ppc64el | 353.4 kB | 1,092.0 kB | [list of files] |
| s390x | 341.4 kB | 954.0 kB | [list of files] |