Package: samtools (1.20-3)

Links for samtools

Debian Resources:

Download Source Package samtools:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)
Étienne Mollier (QA Page)

External Resources:

Homepage [www.htslib.org]

Similar packages:

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Other Packages Related to samtools

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libhts3t64 (>= 1.20~)

C library for high-throughput sequencing data formats
dep: libncurses6 (>= 6)

shared libraries for terminal handling
dep: libtinfo6 (>= 6)

shared low-level terminfo library for terminal handling
dep: zlib1g (>= 1:1.2.3.3)

compression library - runtime

sug: cwltool

Common Workflow Language reference implementation

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Architecture	Package Size	Installed Size	Files
armel	601.7 kB	1,330.0 kB	[list of files]