Package: stringtie (2.1.4+ds-4)

Links for stringtie

Debian Resources:

Download Source Package stringtie:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Steffen Moeller (QA Page)
Nilesh Patra (QA Page)

External Resources:

Homepage [ccb.jhu.edu]

Similar packages:

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

Other Packages Related to stringtie

depends

recommends

suggests

enhances

dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.7) [not amd64, arm64, ppc64el]
dep: libgcc-s1 (>= 3.4) [amd64, mips64el]

GCC support library

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386, mipsel]
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 4.1.1)

GNU Standard C++ Library v3
dep: zlib1g (>= 1:1.2.3.3)

compression library - runtime

rec: stringtie-examples

Package not available

sug: cufflinks

Transcript assembly, differential expression and regulation for RNA-Seq

Download stringtie

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	397.0 kB	1,018.0 kB	[list of files]
arm64	340.6 kB	970.0 kB	[list of files]
armel	332.9 kB	949.0 kB	[list of files]
armhf	344.0 kB	657.0 kB	[list of files]
i386	419.7 kB	1,237.0 kB	[list of files]
mips64el	356.1 kB	1,194.0 kB	[list of files]
mipsel	350.4 kB	1,177.0 kB	[list of files]
ppc64el	402.0 kB	1,310.0 kB	[list of files]
s390x	354.9 kB	1,078.0 kB	[list of files]