[ Source: lumpy-sv ]
Package: lumpy-sv (0.3.1+dfsg-5)
Links for lumpy-sv
Debian Resources:
Download Source Package lumpy-sv:
Maintainers:
External Resources:
- Homepage [github.com]
Similar packages:
general probabilistic framework for structural variant discovery
LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.
Other Packages Related to lumpy-sv
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- dep: bamkit
- tools for common BAM file manipulations
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, mipsel]
-
- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 5.2) [armel, armhf]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 9) [not armel, armhf]
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samblaster
- marks duplicates, extracts discordant/split reads
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: sambamba
- tools for working with SAM/BAM data
Download lumpy-sv
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 181.5 kB | 631.0 kB | [list of files] |
| arm64 | 159.7 kB | 563.0 kB | [list of files] |
| armel | 153.3 kB | 545.0 kB | [list of files] |
| armhf | 161.4 kB | 433.0 kB | [list of files] |
| i386 | 198.4 kB | 673.0 kB | [list of files] |
| mips64el | 167.4 kB | 720.0 kB | [list of files] |
| mipsel | 175.8 kB | 708.0 kB | [list of files] |
| ppc64el | 183.2 kB | 803.0 kB | [list of files] |