[ Källkod: lumpy-sv ]
Paket: lumpy-sv (0.3.1+dfsg-5)
Länkar för lumpy-sv
Debianresurser:
Hämta källkodspaketet lumpy-sv:
Ansvariga:
Externa resurser:
- Hemsida [github.com]
Liknande paket:
general probabilistic framework for structural variant discovery
LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.
Andra paket besläktade med lumpy-sv
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- dep: bamkit
- tools for common BAM file manipulations
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.29)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, mipsel]
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- dep: libgzstream0 (>= 1.5+dfsg)
- provide functionality of zlib C-library in a C++ iostream
-
- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 5.2) [armel, armhf]
- GNU standardbibliotek v3 för C++
- dep: libstdc++6 (>= 9) [ej armel, armhf]
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samblaster
- marks duplicates, extracts discordant/split reads
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: sambamba
- tools for working with SAM/BAM data
Hämta lumpy-sv
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 181,5 kbyte | 631,0 kbyte | [filförteckning] |
| arm64 | 159,7 kbyte | 563,0 kbyte | [filförteckning] |
| armel | 153,3 kbyte | 545,0 kbyte | [filförteckning] |
| armhf | 161,4 kbyte | 433,0 kbyte | [filförteckning] |
| i386 | 198,4 kbyte | 673,0 kbyte | [filförteckning] |
| mips64el | 167,4 kbyte | 720,0 kbyte | [filförteckning] |
| mipsel | 175,8 kbyte | 708,0 kbyte | [filförteckning] |
| ppc64el | 183,2 kbyte | 803,0 kbyte | [filförteckning] |