Package: kleborate (2.0.1-1)

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Homepage [github.com]

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tool to screen Klebsiella genome assemblies

Kleborate is a tool to screen Klebsiella genome assemblies for:

 * MLST sequence type
 * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
 * ICEKp associated virulence loci: yersiniabactin (ybt),
   colibactin (clb)
 * virulence plasmid associated loci: salmochelin (iro), aerobactin
   (iuc), hypermucoidy (rmpA, rmpA2)
 * antimicrobial resistance genes, including quinolone resistance SNPs
   and colistin resistance truncations
 * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
   and Kaptive

Other Packages Related to kleborate

depends

recommends

suggests

enhances

dep: kaptive

obtain information about K and O types for Klebsiella genome assemblies
dep: kaptive-data

reference data for kaptive for Klebsiella genome assemblies
dep: mash

fast genome and metagenome distance estimation using MinHash
dep: ncbi-blast+

next generation suite of BLAST sequence search tools
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-distutils

distutils package for Python 3.x

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Architecture	Package Size	Installed Size	Files
amd64	4,970.5 kB	36,700.0 kB	[list of files]
arm64	4,970.5 kB	36,700.0 kB	[list of files]
mips64el	5,015.0 kB	37,996.0 kB	[list of files]
ppc64el	4,986.6 kB	39,724.0 kB	[list of files]
s390x	4,973.6 kB	36,700.0 kB	[list of files]