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/usr/bin/bam12auxmerge
/usr/bin/bam12split
/usr/bin/bam12strip
/usr/bin/bamadapterclip
/usr/bin/bamadapterfind
/usr/bin/bamalignfrac
/usr/bin/bamauxmerge
/usr/bin/bamauxmerge2
/usr/bin/bamauxsort
/usr/bin/bamcat
/usr/bin/bamchecksort
/usr/bin/bamclipXT
/usr/bin/bamclipreinsert
/usr/bin/bamcollate2
/usr/bin/bamdepth
/usr/bin/bamdepthintersect
/usr/bin/bamdifference
/usr/bin/bamdownsamplerandom
/usr/bin/bamexplode
/usr/bin/bamexploderef
/usr/bin/bamfastcat
/usr/bin/bamfastexploderef
/usr/bin/bamfastnumextract
/usr/bin/bamfastsplit
/usr/bin/bamfeaturecount
/usr/bin/bamfillquery
/usr/bin/bamfilteraux
/usr/bin/bamfiltereofblocks
/usr/bin/bamfilterflags
/usr/bin/bamfilterheader
/usr/bin/bamfilterheader2
/usr/bin/bamfilterk
/usr/bin/bamfilterlength
/usr/bin/bamfiltermc
/usr/bin/bamfilternames
/usr/bin/bamfilterrefid
/usr/bin/bamfilterrg
/usr/bin/bamfixmateinformation
/usr/bin/bamfixpairinfo
/usr/bin/bamflagsplit
/usr/bin/bamindex
/usr/bin/bamintervalcomment
/usr/bin/bamintervalcommenthist
/usr/bin/bammapdist
/usr/bin/bammarkduplicates
/usr/bin/bammarkduplicates2
/usr/bin/bammarkduplicatesopt
/usr/bin/bammaskflags
/usr/bin/bammdnm
/usr/bin/bammerge
/usr/bin/bamnumericalindex
/usr/bin/bamnumericalindexstats
/usr/bin/bamrank
/usr/bin/bamranksort
/usr/bin/bamrecalculatecigar
/usr/bin/bamrecompress
/usr/bin/bamrefextract
/usr/bin/bamrefinterval
/usr/bin/bamreheader
/usr/bin/bamreplacechecksums
/usr/bin/bamreset
/usr/bin/bamscrapcount
/usr/bin/bamseqchksum
/usr/bin/bamsormadup
/usr/bin/bamsort
/usr/bin/bamsplit
/usr/bin/bamsplitdiv
/usr/bin/bamstreamingmarkduplicates
/usr/bin/bamtofastq
/usr/bin/bamvalidate
/usr/bin/bamzztoname
/usr/bin/fastaexplod
/usr/bin/fastqtobam
/usr/bin/fastqtobam2
/usr/bin/normalisefasta
/usr/bin/populaterefcache
/usr/share/doc/biobambam2/README.gz
/usr/share/doc/biobambam2/README.md.gz
/usr/share/doc/biobambam2/README.test
/usr/share/doc/biobambam2/README.test-data
/usr/share/doc/biobambam2/changelog.Debian.gz
/usr/share/doc/biobambam2/changelog.gz
/usr/share/doc/biobambam2/copyright
/usr/share/doc/biobambam2/examples/README.test-data
/usr/share/doc/biobambam2/examples/SRR11728627.bam
/usr/share/doc/biobambam2/examples/SRR11728641.bam
/usr/share/doc/biobambam2/run-unit-test
/usr/share/man/man1/bam12auxmerge.1.gz
/usr/share/man/man1/bam12split.1.gz
/usr/share/man/man1/bam12strip.1.gz
/usr/share/man/man1/bamadapterclip.1.gz
/usr/share/man/man1/bamadapterfind.1.gz
/usr/share/man/man1/bamalignfrac.1.gz
/usr/share/man/man1/bamauxmerge.1.gz
/usr/share/man/man1/bamauxmerge2.1.gz
/usr/share/man/man1/bamauxsort.1.gz
/usr/share/man/man1/bambisect.1.gz
/usr/share/man/man1/bamcat.1.gz
/usr/share/man/man1/bamchecksort.1.gz
/usr/share/man/man1/bamclipXT.1.gz
/usr/share/man/man1/bamclipreinsert.1.gz
/usr/share/man/man1/bamcollate2.1.gz
/usr/share/man/man1/bamconsensus.1.gz
/usr/share/man/man1/bamdownsamplerandom.1.gz
/usr/share/man/man1/bamfeaturecount.1.gz
/usr/share/man/man1/bamfillquery.1.gz
/usr/share/man/man1/bamfilteraux.1.gz
/usr/share/man/man1/bamfilterflags.1.gz
/usr/share/man/man1/bamfilterheader.1.gz
/usr/share/man/man1/bamfilterheader2.1.gz
/usr/share/man/man1/bamfiltermc.1.gz
/usr/share/man/man1/bamfilterrg.1.gz
/usr/share/man/man1/bamfixmateinformation.1.gz
/usr/share/man/man1/bamflagsplit.1.gz
/usr/share/man/man1/bamindex.1.gz
/usr/share/man/man1/bamintervalcomment.1.gz
/usr/share/man/man1/bammarkduplicates.1.gz
/usr/share/man/man1/bammarkduplicates2.1.gz
/usr/share/man/man1/bammarkduplicatesopt.1.gz
/usr/share/man/man1/bammaskflags.1.gz
/usr/share/man/man1/bammdnm.1.gz
/usr/share/man/man1/bammerge.1.gz
/usr/share/man/man1/bamrank.1.gz
/usr/share/man/man1/bamranksort.1.gz
/usr/share/man/man1/bamrecalculatecigar.1.gz
/usr/share/man/man1/bamrecompress.1.gz
/usr/share/man/man1/bamreset.1.gz
/usr/share/man/man1/bamseqchksum.1.gz
/usr/share/man/man1/bamsormadup.1.gz
/usr/share/man/man1/bamsort.1.gz
/usr/share/man/man1/bamsplit.1.gz
/usr/share/man/man1/bamsplitdiv.1.gz
/usr/share/man/man1/bamstreamingmarkduplicates.1.gz
/usr/share/man/man1/bamtagconversion.1.gz
/usr/share/man/man1/bamtofastq.1.gz
/usr/share/man/man1/bamvalidate.1.gz
/usr/share/man/man1/bamzztoname.1.gz
/usr/share/man/man1/fastaexplod.1.gz
/usr/share/man/man1/fastqtobam.1.gz
/usr/share/man/man1/filtergtf.1.gz
/usr/share/man/man1/normalisefasta.1.gz