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/usr/bin/flye
/usr/bin/flye-modules
/usr/lib/python3/dist-packages/flye-2.9.5.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/flye-2.9.5.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/flye-2.9.5.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/flye-2.9.5.egg-info/top_level.txt
/usr/lib/python3/dist-packages/flye/__build__.py
/usr/lib/python3/dist-packages/flye/__init__.py
/usr/lib/python3/dist-packages/flye/__version__.py
/usr/lib/python3/dist-packages/flye/assembly/__init__.py
/usr/lib/python3/dist-packages/flye/assembly/assemble.py
/usr/lib/python3/dist-packages/flye/assembly/repeat_graph.py
/usr/lib/python3/dist-packages/flye/assembly/scaffolder.py
/usr/lib/python3/dist-packages/flye/config/__init__.py
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_corrected_reads.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_defaults.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_hifi.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_nano_hq.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_raw_reads.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/asm_subasm.cfg
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_g36_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_g36_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/nano_r94_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_chm13_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_chm13_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_homopolymers.mat
/usr/lib/python3/dist-packages/flye/config/bin_cfg/pacbio_substitutions.mat
/usr/lib/python3/dist-packages/flye/config/configurator.py
/usr/lib/python3/dist-packages/flye/config/py_cfg.py
/usr/lib/python3/dist-packages/flye/main.py
/usr/lib/python3/dist-packages/flye/polishing/__init__.py
/usr/lib/python3/dist-packages/flye/polishing/alignment.py
/usr/lib/python3/dist-packages/flye/polishing/bubbles.py
/usr/lib/python3/dist-packages/flye/polishing/consensus.py
/usr/lib/python3/dist-packages/flye/polishing/polish.py
/usr/lib/python3/dist-packages/flye/repeat_graph/__init__.py
/usr/lib/python3/dist-packages/flye/repeat_graph/graph_alignment.py
/usr/lib/python3/dist-packages/flye/repeat_graph/repeat_graph.py
/usr/lib/python3/dist-packages/flye/short_plasmids/__init__.py
/usr/lib/python3/dist-packages/flye/short_plasmids/circular_sequences.py
/usr/lib/python3/dist-packages/flye/short_plasmids/plasmids.py
/usr/lib/python3/dist-packages/flye/short_plasmids/unmapped_reads.py
/usr/lib/python3/dist-packages/flye/short_plasmids/utils.py
/usr/lib/python3/dist-packages/flye/tests/__init__.py
/usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb.fasta
/usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb_reads.fastq.gz
/usr/lib/python3/dist-packages/flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz
/usr/lib/python3/dist-packages/flye/tests/test_toy.py
/usr/lib/python3/dist-packages/flye/trestle/__init__.py
/usr/lib/python3/dist-packages/flye/trestle/divergence.py
/usr/lib/python3/dist-packages/flye/trestle/graph_resolver.py
/usr/lib/python3/dist-packages/flye/trestle/trestle.py
/usr/lib/python3/dist-packages/flye/trestle/trestle_config.py
/usr/lib/python3/dist-packages/flye/utils/__init__.py
/usr/lib/python3/dist-packages/flye/utils/bytes2human.py
/usr/lib/python3/dist-packages/flye/utils/fasta_parser.py
/usr/lib/python3/dist-packages/flye/utils/sam_parser.py
/usr/lib/python3/dist-packages/flye/utils/utils.py
/usr/share/doc/flye/FAQ.md.gz
/usr/share/doc/flye/README.md.gz
/usr/share/doc/flye/USAGE.md.gz
/usr/share/doc/flye/changelog.Debian.gz
/usr/share/doc/flye/changelog.gz
/usr/share/doc/flye/copyright
/usr/share/doc/flye/graph_example.png
/usr/share/man/man1/flye-modules.1.gz
/usr/share/man/man1/flye.1.gz