Пакет: trinityrnaseq (2.6.6+dfsg-6)

Връзки за trinityrnaseq

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Изтегляне на пакет-източник trinityrnaseq.

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Външни препратки:

Начална страница [trinityrnaseq.github.io]

Подобни пакети:

RNA-Seq De novo Assembly

Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.

Други пакети, свързани с trinityrnaseq

зависимости

препоръчани

предложени

enhances

dep: berkeley-express

Streaming quantification for high-throughput sequencing
dep: bowtie

Ultrafast memory-efficient short read aligner
dep: bowtie2

ultrafast memory-efficient short read aligner
dep: curl

command line tool for transferring data with URL syntax
dep: default-jre-headless

Standard Java or Java compatible Runtime (headless)
dep: jaligner

Smith-Waterman algorithm with Gotoh's improvement
dep: jellyfish

count k-mers in DNA sequences
dep: libc6 (>= 2.27)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libcommons-collections4-java

Apache Commons Collections - Extended Collections API for Java
dep: libgcc1 (>= 1:3.0)

GCC support library
dep: libgetopt-java

GNU getopt - Java port
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libhts2 (>= 1.0)

C library for high-throughput sequencing data formats
dep: libjung-free-java

Java Universal Network/Graph Framework
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: libwww-perl

simple and consistent interface to the world-wide web
dep: ncbi-blast+

next generation suite of BLAST sequence search tools
dep: parafly

parallel command processing using OpenMP
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3-numpy

Fast array facility to the Python 3 language
dep: r-base-core

GNU R core of statistical computation and graphics system
dep: r-bioc-qvalue

GNU R package for Q-value estimation for FDR control
dep: r-cran-cluster

GNU R package for cluster analysis by Rousseeuw et al
dep: rsem

RNA-Seq by Expectation-Maximization
dep: salmon

wicked-fast transcript quantification from RNA-seq data
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: transdecoder

find coding regions within RNA transcript sequences
dep: trimmomatic

flexible read trimming tool for Illumina NGS data
dep: zlib1g (>= 1:1.1.4)

compression library - runtime

rec: trinityrnaseq-examples

RNA-Seq De novo Assembly common example and testing files

sug: collectl

Utility to collect Linux performance data

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	1 794,9 кБ	8 883,0 кБ	[списък на файловете]