Пакет: r-cran-ape (5.2-1)

Връзки за r-cran-ape

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Начална страница [cran.r-project.org]

Подобни пакети:

GNU R package for Analyses of Phylogenetics and Evolution

This package provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.

Етикети: Software Development: GNU R Development, Field: Statistics, Implemented in: GNU R

Други пакети, свързани с r-cran-ape

зависимости

препоръчани

предложени

enhances

dep: libblas3

Basic Linear Algebra Reference implementations, shared library

или libblas.so.3

виртуален пакет, предлаган от libatlas3-base, libblas3, libblis2-openmp, libblis2-pthread, libblis2-serial, libopenblas-base
dep: libc6 (>= 2.4)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libgcc1 (>= 1:3.5)

GCC support library
dep: libgfortran5 (>= 8)

Runtime library for GNU Fortran applications
dep: liblapack3

Library of linear algebra routines 3 - shared version

или liblapack.so.3

виртуален пакет, предлаган от libatlas3-base, liblapack3, libopenblas-base
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: r-api-3.5

виртуален пакет, предлаган от r-base-core
dep: r-base-core (>= 3.5.1-1)

GNU R core of statistical computation and graphics system
dep: r-cran-lattice

GNU R package for 'Trellis' graphics
dep: r-cran-nlme

GNU R package for (non-)linear mixed effects models
dep: r-cran-rcpp (>= 0.12.0)

GNU R package for Seamless R and C++ Integration

sug: clustalw

global multiple nucleotide or peptide sequence alignment
sug: muscle

Multiple alignment program of protein sequences
sug: phyml

Phylogenetic estimation using Maximum Likelihood
sug: r-cran-expm

GNU R Computation of the matrix exponential and related quantities
sug: r-cran-gee

Generalized Estimation Equation Solver
sug: r-cran-igraph

GNU R network analysis and visualization
sug: t-coffee

Multiple Sequence Alignment

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
armhf	2 093,1 кБ	2 339,0 кБ	[списък на файловете]