Пакет: parsnp (1.2+dfsg-5)

Връзки за parsnp

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Външни препратки:

Начална страница [harvest.readthedocs.org]

Подобни пакети:

rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

Други пакети, свързани с parsnp

зависимости

препоръчани

предложени

enhances

dep: fasttree

phylogenetic trees from alignments of nucleotide or protein sequences
dep: libc6 (>= 2.27)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libgcc1 (>= 1:3.0)

GCC support library
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libmuscle1 (>= 3.7+4565)

multiple alignment library for protein sequences
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: mummer

Efficient sequence alignment of full genomes
dep: phipack

PHI test and other tests of recombination
dep: python

interactive high-level object-oriented language (Python2 version)
dep: python-numpy

Numerical Python adds a fast array facility to the Python language

rec: python-dendropy

DendroPy Phylogenetic Computing Library (Python 2)

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