Пакет: r-bioc-dada2 (1.26.0+dfsg-1)

Връзки за r-bioc-dada2

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Начална страница [bioconductor.org]

Подобни пакети:

sample inference from amplicon sequencing data

The dada2 package contributes to software workflows to interpret sequencing data from microbiota - the relative abundance of bacterial and/or yeast, typically measured in the gut. It infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.

Други пакети, свързани с r-bioc-dada2

зависимости

препоръчани

предложени

enhances

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: r-api-4.0

виртуален пакет, предлаган от r-base-core
dep: r-api-bioc-3.16

виртуален пакет, предлаган от r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biocgenerics (>= 0.22.0)

generic functions for Bioconductor
dep: r-bioc-biostrings (>= 2.42.1)

GNU R string objects representing biological sequences
dep: r-bioc-iranges (>= 2.6.0)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-shortread (>= 1.32.0)

GNU R classes and methods for high-throughput short-read sequencing data
dep: r-bioc-xvector (>= 0.16.0)

BioConductor representation and manpulation of external sequences
dep: r-cran-ggplot2 (>= 2.1.0)

implementation of the Grammar of Graphics
dep: r-cran-rcpp (>= 0.12.0)

GNU R package for Seamless R and C++ Integration
dep: r-cran-rcppparallel (>= 4.3.0)

parallel programming tools for Rcpp
dep: r-cran-reshape2 (>= 1.4.1)

Flexibly reshape data: a reboot of the reshape package

sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	2 720,7 кБ	3 100,0 кБ	[списък на файловете]