Пакет: quicktree (2.5-5)

Връзки за quicktree

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Изтегляне на пакет-източник quicktree.

Отговорници:

Външни препратки:

Начална страница [github.com]

Подобни пакети:

Neighbor-Joining algorithm for phylogenies

QuickTree is an efficient implementation of the Neighbor-Joining algorithm (PMID: 3447015), capable of reconstructing phylogenies from huge alignments in time less than the age of the universe.

QuickTree accepts both distance matrix and multiple-sequence-aligment inputs. The former should be in PHYLIP format. The latter should be in Stockholm format, which is the native alignment format for the Pfam database. Alignments in various formats can be converted to Stockholm format with the sreformat program, which is part of the HMMer package (hmmer.org).

The tress are written to stdout, in the Newick/New-Hampshire format use by PHYLIP and many other programs

Други пакети, свързани с quicktree

зависимости

препоръчани

предложени

enhances

dep: libc6 (>= 2.29)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb

sug: hmmer

profile hidden Markov models for protein sequence analysis

или hmmer2

profile hidden Markov models for protein sequence analysis

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
ppc64el	23,3 кБ	85,0 кБ	[списък на файловете]