Пакет: stacks (2.62+dfsg-1)

Връзки за stacks

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Изтегляне на пакет-източник stacks.

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Външни препратки:

Начална страница [creskolab.uoregon.edu]

Подобни пакети:

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Други пакети, свързани с stacks

зависимости

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enhances

dep: libc6 (>= 2.34)

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dep: libdbi-perl

Perl Database Interface (DBI)
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: zlib1g (>= 1:1.2.6)

compression library - runtime

rec: libspreadsheet-writeexcel-perl

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rec: littler

GNU R scripting and command-line front-end -- transition package
също и виртуален пакет, предлаган от r-cran-littler
rec: python3

interactive high-level object-oriented language (default python3 version)

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
mipsel	1 058,5 кБ	6 945,0 кБ	[списък на файловете]