Пакет: hisat2 (2.2.1-4 и други)

Връзки за hisat2

Ресурси за Debian:

Изтегляне на пакет-източник hisat2.

Отговорници:

Външни препратки:

Начална страница [daehwankimlab.github.io]

Подобни пакети:

graph-based alignment of short nucleotide reads to many genomes

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM).

Други пакети, свързани с hisat2

зависимости

препоръчани

предложени

enhances

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)

rec: bcftools

genomic variant calling and manipulation of VCF/BCF files
rec: python3-hisat2

Python scripts accompanying hisat2
rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

Изтегляне на hisat2

Изтегляне за всички налични архитектури
Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
arm64	2.2.1-4+b2	3 397,1 кБ	13 162,0 кБ	[списък на файловете]