[ 原始碼: vcfanno ]
套件:vcfanno(0.3.5+ds-2)
annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.
* For VCF, values are pulled by name from the INFO field with special cases of ID and FILTER to pull from those VCF columns. * For BED, values are pulled from (1-based) column number. * For BAM, depth (count), "mapq" and "seq" are currently supported.
Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.
其他與 vcfanno 有關的套件
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- dep: libc6 (>= 2.34) [除 alpha]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6-udeb
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6.1-udeb
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- dep: libgcc-s1 (>= 3.3.1) [ppc64, x32]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [alpha, sparc64]
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- dep: libgo22 [alpha, ppc64, sparc64, x32]
- Runtime library for GNU Go applications
下載 vcfanno
硬體架構 | 套件大小 | 安裝後大小 | 檔案 |
---|---|---|---|
alpha (非官方移植版) | 625。6 kB | 3,140。0 kB | [檔案列表] |
amd64 | 2,249。3 kB | 6,683。0 kB | [檔案列表] |
arm64 | 1,926。1 kB | 6,367。0 kB | [檔案列表] |
armel | 1,923。4 kB | 6,531。0 kB | [檔案列表] |
armhf | 1,915。6 kB | 6,491。0 kB | [檔案列表] |
i386 | 2,071。5 kB | 6,520。0 kB | [檔案列表] |
mips64el | 1,736。8 kB | 7,410。0 kB | [檔案列表] |
ppc64 (非官方移植版) | 727。7 kB | 4,594。0 kB | [檔案列表] |
ppc64el | 1,915。0 kB | 6,558。0 kB | [檔案列表] |
riscv64 | 1,945。1 kB | 6,439。0 kB | [檔案列表] |
s390x | 2,058。2 kB | 7,111。0 kB | [檔案列表] |
sparc64 (非官方移植版) | 606。9 kB | 4,930。0 kB | [檔案列表] |
x32 (非官方移植版) | 647。4 kB | 2,660。0 kB | [檔案列表] |