[ 原始碼： vcfanno ]
套件：vcfanno（0.3.5+ds-2）
annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.
* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.
其他與 vcfanno 有關的套件
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- dep: libc6 (>= 2.34) [除 alpha]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb
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- dep: libgcc-s1 (>= 3.3.1) [ppc64, x32]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [alpha, sparc64]
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- dep: libgo22 [alpha, ppc64, sparc64, x32]
- Runtime library for GNU Go applications
下載 vcfanno
| 硬體架構 | 套件大小 | 安裝後大小 | 檔案 |
|---|---|---|---|
| alpha （非官方移植版） | 625。6 kB | 3，140。0 kB | [檔案列表] |
| amd64 | 2，249。3 kB | 6，683。0 kB | [檔案列表] |
| arm64 | 1，926。1 kB | 6，367。0 kB | [檔案列表] |
| armel | 1，923。4 kB | 6，531。0 kB | [檔案列表] |
| armhf | 1，915。6 kB | 6，491。0 kB | [檔案列表] |
| i386 | 2，071。5 kB | 6，520。0 kB | [檔案列表] |
| mips64el | 1，736。8 kB | 7，410。0 kB | [檔案列表] |
| ppc64 （非官方移植版） | 727。7 kB | 4，594。0 kB | [檔案列表] |
| ppc64el | 1，915。0 kB | 6，558。0 kB | [檔案列表] |
| riscv64 | 1，945。1 kB | 6，439。0 kB | [檔案列表] |
| s390x | 2，058。2 kB | 7，111。0 kB | [檔案列表] |
| sparc64 （非官方移植版） | 606。9 kB | 4，930。0 kB | [檔案列表] |
| x32 （非官方移植版） | 647。4 kB | 2，660。0 kB | [檔案列表] |