[ 原始碼： skesa ]
套件：skesa（2.4.0-6 以及其他的）
strategic Kmer extension for scrupulous assemblies
SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.
其他與 skesa 有關的套件
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- dep: libboost-iostreams1.83.0 (>= 1.83.0) [除 x32]
- Boost.Iostreams Library
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- dep: libboost-program-options1.83.0 (>= 1.83.0) [除 x32]
- program options library for C++
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- dep: libboost-timer1.83.0 (>= 1.83.0) [除 x32]
- C++ wall clock and CPU process timers
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- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC 支援函式庫
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- dep: libncbi-vdb2 (>= 2.11.2+dfsg) [x32]
- 套件暫時不可用
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- dep: libncbi-vdb3 (>= 3.0.2+dfsg) [除 x32]
- libraries for using data in the INSDC Sequence Read Archives
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- dep: libngs-c++3 (>= 3.0.3+dfsg) [除 x32]
- Next Generation Sequencing language Bindings (C++ runtime)
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- dep: libstdc++6 (>= 12.2.0-9) [x32]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 13.1) [除 x32]
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- dep: zlib1g (>= 1:1.1.4) [x32]
- 壓縮函式庫 - 跑程式時用(runtime)