套件：r-bioc-monocle（2.30.0-1 以及其他的）

r-bioc-monocle 的相關連結

Debian 的資源：

下載原始碼套件 r-bioc-monocle：

維護小組：

外部的資源：

主頁 [bioconductor.org]

相似套件：

clustering, differential expression, and trajectory analysis for RNA-Seq

Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.

其他與 r-bioc-monocle 有關的套件

依賴

推薦

建議

增強

dep: libc6 (>= 2.11) [armel, armhf, i386, m68k, mips64el, ppc64, s390x, sparc64]

GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb

dep: libc6 (>= 2.14) [amd64]

dep: libc6 (>= 2.16) [x32]

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.2) [hppa]

dep: libc6 (>= 2.27) [riscv64]

dep: libc6 (>= 2.37) [sh4]
dep: libc6.1 (>= 2.11) [alpha]

GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libgcc-s1 (>= 3.0) [除 armel, armhf, hppa, ia64, m68k]

GCC 支援函式庫

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC 支援函式庫
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC 支援函式庫
dep: libstdc++6 (>= 11) [x32]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 13.1) [除 x32]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: r-api-4.0

本虛擬套件由這些套件填實： r-base-core
dep: r-api-bioc-3.16 [x32]

套件暫時不可用
dep: r-api-bioc-3.18 [除 x32]

本虛擬套件由這些套件填實： r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-1) [x32]

GNU R core of statistical computation and graphics system
dep: r-bioc-biobase

base functions for Bioconductor
dep: r-bioc-biocgenerics

generic functions for Bioconductor
dep: r-bioc-biocviews

Categorized views of R package repositories
dep: r-bioc-hsmmsinglecell (>= 0.101.5)

Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts
dep: r-bioc-limma

linear models for microarray data
dep: r-cran-cluster

GNU R package for cluster analysis by Rousseeuw et al
dep: r-cran-combinat

GNU R package with utilities for combinatorics
dep: r-cran-ddrtree (>= 0.1.4)

GNU R learning principal graphs with DDRTree
dep: r-cran-dplyr

GNU R grammar of data manipulation
dep: r-cran-fastica

GNU R package for ICA and Projection Pursuit
dep: r-cran-ggplot2 (>= 1.0.0)

implementation of the Grammar of Graphics
dep: r-cran-igraph (>= 1.0.1)

GNU R network analysis and visualization
dep: r-cran-irlba (>= 2.0.0)

GNU R fast truncated SVD, PCA and symmetric eigendecomposition
dep: r-cran-leidenbase (>= 0.1.9)

GNU R and C/C++ Wrappers to Run the Leiden find_partition() Function
dep: r-cran-mass

GNU R package of Venables and Ripley's MASS
dep: r-cran-matrix (>= 1.2-6)

GNU R package of classes for dense and sparse matrices
dep: r-cran-matrixstats

GNU R methods that apply to rows and columns of a matrix
dep: r-cran-pheatmap

GNU R package to create pretty heatmaps
dep: r-cran-plyr

tools for splitting, applying and combining data
dep: r-cran-proxy

GNU R distance and similarity measures
dep: r-cran-qlcmatrix

GNU R utility sparse matrix functions for quantitative language
dep: r-cran-rann (>= 2.5)

Fast Nearest Neighbour Search Using L2 Metric
dep: r-cran-rcpp (>= 0.12.0)

GNU R package for Seamless R and C++ Integration
dep: r-cran-reshape2

Flexibly reshape data: a reboot of the reshape package
dep: r-cran-rtsne

GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
dep: r-cran-slam

GNU R sparse lighweight arrays and matrices package
dep: r-cran-stringr

Make it easier to work with strings
dep: r-cran-tibble

GNU R Simple Data Frames
dep: r-cran-vgam (>= 1.0-6)

GNU R package for estimating vector generalized additive models
dep: r-cran-viridis

GNU R package for color maps from matplotlib

sug: r-bioc-scater

Single-Cell Analysis Toolkit for Gene Expression Data in R
sug: r-cran-hmisc

GNU R miscellaneous functions by Frank Harrell
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-seurat [除 m68k, sh4]

Tools for Single Cell Genomics
sug: r-cran-testthat

GNU R testsuite

下載 r-bioc-monocle

下載可用於所有硬體架構的
硬體架構	版本	套件大小	安裝後大小	檔案
alpha （非官方移植版）	2.30.0-1	1，391。7 kB	1，709。0 kB	[檔案列表]
amd64	2.30.0-1	1，392。3 kB	1，657。0 kB	[檔案列表]
arm64	2.30.0-1	1，389。5 kB	1，709。0 kB	[檔案列表]
armel	2.30.0-1	1，388。8 kB	1，644。0 kB	[檔案列表]
armhf	2.30.0-1	1，388。9 kB	1，632。0 kB	[檔案列表]
hppa （非官方移植版）	2.30.0-1	1，392。4 kB	1，662。0 kB	[檔案列表]
i386	2.30.0-1	1，393。5 kB	1，655。0 kB	[檔案列表]
ia64 （非官方移植版）	2.30.0-1	1，396。8 kB	1，715。0 kB	[檔案列表]
m68k （非官方移植版）	2.30.0-1	1，380。3 kB	1，643。0 kB	[檔案列表]
mips64el	2.30.0-1	1，389。7 kB	1，713。0 kB	[檔案列表]
ppc64 （非官方移植版）	2.30.0-1	1，393。0 kB	1，711。0 kB	[檔案列表]
ppc64el	2.30.0-1	1，392。5 kB	1，709。0 kB	[檔案列表]
riscv64	2.30.0-1+b1	1，391。8 kB	1，645。0 kB	[檔案列表]
s390x	2.30.0-1	1，391。7 kB	1，660。0 kB	[檔案列表]
sh4 （非官方移植版）	2.30.0-1	1，396。1 kB	1，708。0 kB	[檔案列表]
sparc64 （非官方移植版）	2.30.0-1	1，388。5 kB	2，608。0 kB	[檔案列表]
x32 （非官方移植版）	2.26.0-2	1，389。6 kB	1，640。0 kB	[檔案列表]