[ 原始碼： mindthegap ]
套件：mindthegap（2.3.0-4 以及其他的）
performs detection and assembly of DNA insertion variants in NGS read datasets
Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. It takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gaps between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file.
其他與 mindthegap 有關的套件
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- dep: libc6 (>= 2.38) [除 alpha, hppa, ia64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.8) [hppa]
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- dep: libc6.1 (>= 2.37) [ia64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6.1-udeb
- dep: libc6.1 (>= 2.38) [alpha]
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- dep: libgatbcore3 (>= 1.4.2+dfsg-7)
- dynamic library of the Genome Analysis Toolbox
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- dep: libgcc-s1 (>= 3.0) [除 alpha, hppa, ia64, riscv64, sparc64]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 支援函式庫
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- dep: libhdf5-103-1 [hppa]
- HDF5 C runtime files - serial version
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- dep: libhdf5-103-1t64 [除 hppa]
- HDF5 C runtime files - serial version
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- dep: libstdc++6 (>= 11) [hppa]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 13.1) [除 hppa]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
下載 mindthegap
| 硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
|---|---|---|---|---|
| alpha （非官方移植版） | 2.3.0-4 | 224。4 kB | 1，052。0 kB | [檔案列表] |
| amd64 | 2.3.0-4 | 246。8 kB | 1，073。0 kB | [檔案列表] |
| arm64 | 2.3.0-4 | 221。6 kB | 1，049。0 kB | [檔案列表] |
| hppa （非官方移植版） | 2.3.0-1 | 273。2 kB | 1，000。0 kB | [檔案列表] |
| ia64 （非官方移植版） | 2.3.0-3+b1 | 268。9 kB | 1，671。0 kB | [檔案列表] |
| mips64el | 2.3.0-4 | 198。2 kB | 1，169。0 kB | [檔案列表] |
| ppc64 （非官方移植版） | 2.3.0-4 | 232。8 kB | 1，241。0 kB | [檔案列表] |
| ppc64el | 2.3.0-4 | 238。5 kB | 1，177。0 kB | [檔案列表] |
| riscv64 | 2.3.0-4 | 238。0 kB | 853。0 kB | [檔案列表] |
| sparc64 （非官方移植版） | 2.3.0-4 | 199。0 kB | 1，054。0 kB | [檔案列表] |
| x32 （非官方移植版） | 2.3.0-4 | 250。3 kB | 956。0 kB | [檔案列表] |