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/usr/bin/optimir
/usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/requires.txt
/usr/lib/python3/dist-packages/OptimiR-1.0.egg-info/top_level.txt
/usr/lib/python3/dist-packages/optimir/__init__.py
/usr/lib/python3/dist-packages/optimir/command_line.py
/usr/lib/python3/dist-packages/optimir/libs/__init__.py
/usr/lib/python3/dist-packages/optimir/libs/annotate.py
/usr/lib/python3/dist-packages/optimir/libs/consistency.py
/usr/lib/python3/dist-packages/optimir/libs/essentials.py
/usr/lib/python3/dist-packages/optimir/libs/filter_reads.py
/usr/lib/python3/dist-packages/optimir/libs/get_counts.py
/usr/lib/python3/dist-packages/optimir/libs/library_preparation.py
/usr/lib/python3/dist-packages/optimir/libs/mapping.py
/usr/lib/python3/dist-packages/optimir/libs/post_process.py
/usr/lib/python3/dist-packages/optimir/libs/pre_process.py
/usr/lib/python3/dist-packages/optimir/libs/process.py
/usr/lib/python3/dist-packages/optimir/libs/read_collapser.py
/usr/lib/python3/dist-packages/optimir/libs/scoring.py
/usr/lib/python3/dist-packages/optimir/libs/summarize.py
/usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v21.gff3
/usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v22.gff3
/usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3
/usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3
/usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa
/usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa
/usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa
/usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa
/usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRBase_v21.fa
/usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRBase_v22.fa
/usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa
/usr/lib/python3/dist-packages/optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa
/usr/share/doc/optimir/README.md.gz
/usr/share/doc/optimir/README.test
/usr/share/doc/optimir/changelog.Debian.gz
/usr/share/doc/optimir/copyright
/usr/share/doc/optimir/examples/Results_example_all/consistency_table.annot
/usr/share/doc/optimir/examples/Results_example_all/isomiRs_dist.annot
/usr/share/doc/optimir/examples/Results_example_all/isomiRs_specific_abundances.txt
/usr/share/doc/optimir/examples/Results_example_all/miRs_and_polymiRs_abundances.txt
/usr/share/doc/optimir/examples/Results_example_all/miRs_merged_abundances.txt
/usr/share/doc/optimir/examples/Results_example_all/polymiRs_specific_abundances.txt
/usr/share/doc/optimir/examples/Results_example_all/polymiRs_table.annot
/usr/share/doc/optimir/examples/S1.fq.gz
/usr/share/doc/optimir/examples/S2.fq.gz
/usr/share/doc/optimir/examples/example_1.sh
/usr/share/doc/optimir/examples/example_all.sh
/usr/share/doc/optimir/examples/genotypes.vcf
/usr/share/doc/optimir/examples/plot_ASE.R
/usr/share/doc/optimir/examples/plot_isoDist.R
/usr/share/doc/optimir/run-unit-test
/usr/share/man/man1/optimir.1.gz