[ buster ]
[ 原始碼： pbalign ]
套件：python-pbalign（0.3.2-1）
map Pacific Biosciences reads to reference DNA sequences (Python2)
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.
pbalign is part of the SMRTAnalysis suite. This package provides the Python library backend.
其他與 python-pbalign 有關的套件
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- dep: blasr (>= 5.3+0)
- mapping single-molecule sequencing reads
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- dep: python
- interactive high-level object-oriented language (Python2 version)
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- dep: python-pbcommand
- common command-line interface for Pacific Biosciences analysis modules
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- dep: python-pbcore
- Python 2 library for processing PacBio data files
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- dep: python-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 2)
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- rec: hdf5-tools
- Hierarchical Data Format 5 (HDF5) - Runtime tools
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- rec: python-pbh5tools
- tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
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- sug: bowtie2
- ultrafast memory-efficient short read aligner
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- sug: gmap
- spliced and SNP-tolerant alignment for mRNA and short reads
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- sug: pbalign-doc
- documentation for pbalign