套件：mummer（3.23+dfsg-7）

Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

標籤: 領域: 生物學, 生物資訊學, 實做語言: implemented-in::c++, interface::commandline, 角色: 程式, 範圍: 實用程式, Purpose: use::comparing, works-with-format::TODO, 支援的格式: 純文字, 處理: 需要一個額外的標籤

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