套件：fasta3（36.3.8h.2020-02-11-3 以及其他的）

fasta3 的相關連結

Debian 的資源：

下載原始碼套件 fasta3：

維護小組：

外部的資源：

主頁 [fasta.bioch.virginia.edu]

相似套件：

tools for searching collections of biological sequences

The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.

 * Protein
   - Protein-protein FASTA
   - Protein-protein Smith-Waterman (ssearch)
   - Global Protein-protein (Needleman-Wunsch) (ggsearch)
   - Global/Local protein-protein (glsearch)
   - Protein-protein with unordered peptides (fasts)
   - Protein-protein with mixed peptide sequences (fastf)

 * Nucleotide
   - Nucleotide-Nucleotide (DNA/RNA fasta)
   - Ordered Nucleotides vs Nucleotide (fastm)
   - Un-ordered Nucleotides vs Nucleotide (fasts)

 * Translated
   - Translated DNA (with frameshifts, e.g. ESTs)
     vs Proteins (fastx/fasty)
   - Protein vs Translated DNA (with frameshifts)
     (tfastx/tfasty)
   - Peptides vs Translated DNA (tfasts)

 * Statistical Significance
   - Protein vs Protein shuffle (prss)
   - DNA vs DNA shuffle (prss)
   - Translated DNA vs Protein shuffle (prfx)

 * Local Duplications
   - Local Protein alignments (lalign)
   - Plot Protein alignment "dot-plot" (plalign)
   - Local DNA alignments (lalign)
   - Plot DNA alignment "dot-plot" (plalign)

This software is often used via a web service at the EBI with readily indexed reference databases at http://www.ebi.ac.uk/Tools/fasta/.

其他與 fasta3 有關的套件

依賴

推薦

建議

增強

dep: libc6 (>= 2.29)

GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb

sug: bedtools

suite of utilities for comparing genomic features
sug: libdbd-mysql-perl

Perl5 database interface to the MariaDB/MySQL database
sug: libdbi-perl

Perl Database Interface (DBI)
sug: libhtml-tableextract-perl

module for extracting the content contained in HTML tables
sug: libjson-perl

module for manipulating JSON-formatted data
sug: liburi-encode-perl

Perl module to encode and decode strings to URIs
sug: libwww-perl

simple and consistent interface to the world-wide web
sug: libxml-twig-perl

Perl module for processing huge XML documents in tree mode
sug: ncbi-blast+

next generation suite of BLAST sequence search tools
sug: perl

Larry Wall's Practical Extraction and Report Language
sug: python3-mysqldb

Python interface to MySQL

下載 fasta3

下載可用於所有硬體架構的
硬體架構	版本	套件大小	安裝後大小	檔案
amd64	36.3.8h.2020-02-11-3+b2	733。1 kB	5，988。0 kB	[檔案列表]
arm64	36.3.8h.2020-02-11-3+b2	680。1 kB	5，505。0 kB	[檔案列表]
armel	36.3.8h.2020-02-11-3+b2	670。4 kB	5，709。0 kB	[檔案列表]
armhf	36.3.8h.2020-02-11-3+b2	635。8 kB	4，417。0 kB	[檔案列表]
i386	36.3.8h.2020-02-11-3+b2	711。5 kB	6，338。0 kB	[檔案列表]
mips64el	36.3.8h.2020-02-11-3+b2	648。3 kB	6，098。0 kB	[檔案列表]
mipsel	36.3.8h.2020-02-11-3+b2	642。8 kB	5，930。0 kB	[檔案列表]
ppc64el	36.3.8h.2020-02-11-3+b2	729。2 kB	7，390。0 kB	[檔案列表]
s390x	36.3.8h.2020-02-11-3+b2	701。9 kB	6，260。0 kB	[檔案列表]