套件:bio-rainbow(2.0.4+dfsg-2)
bio-rainbow 的相關連結
Debian 的資源:
下載原始碼套件 bio-rainbow:
- [bio-rainbow_2.0.4+dfsg-2.dsc]
- [bio-rainbow_2.0.4+dfsg.orig.tar.xz]
- [bio-rainbow_2.0.4+dfsg-2.debian.tar.xz]
維護小組:
外部的資源:
- 主頁 [sourceforge.net]
相似套件:
clustering and assembling short reads for bioinformatics
Efficient tool for clustering and assembling short reads, especially for RAD.
Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data.
其他與 bio-rainbow 有關的套件
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- dep: libc6 (>= 2.29)
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6-udeb
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
下載 bio-rainbow
硬體架構 | 套件大小 | 安裝後大小 | 檔案 |
---|---|---|---|
amd64 | 58。8 kB | 186。0 kB | [檔案列表] |
arm64 | 58。1 kB | 178。0 kB | [檔案列表] |
armel | 56。7 kB | 179。0 kB | [檔案列表] |
armhf | 56。0 kB | 143。0 kB | [檔案列表] |
i386 | 63。9 kB | 203。0 kB | [檔案列表] |
mips64el | 61。4 kB | 209。0 kB | [檔案列表] |
mipsel | 59。9 kB | 202。0 kB | [檔案列表] |
ppc64el | 65。6 kB | 306。0 kB | [檔案列表] |
s390x | 55。9 kB | 194。0 kB | [檔案列表] |