[ 原始碼： bali-phy ]
套件：bali-phy（3.6.0+dfsg-1）
Bayesian Inference of Alignment and Phylogeny
BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.
BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.
其他與 bali-phy 有關的套件
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- dep: libboost-chrono1.74.0 (>= 1.74.0)
- C++ representation of time duration, time point, and clocks
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- dep: libboost-filesystem1.74.0 (>= 1.74.0)
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-program-options1.74.0 (>= 1.74.0)
- program options library for C++
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- dep: libboost-random1.74.0 (>= 1.74.0)
- Boost Random Number Library
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- dep: libc6 (>= 2.29)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libcairo2 (>= 1.4.10)
- Cairo 2D vector graphics library
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- dep: libgcc-s1 (>= 4.2)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- rec: gnuplot
- Command-line driven interactive plotting program.
同時作為一個虛擬套件由這些套件填實： gnuplot-nox, gnuplot-qt, gnuplot-x11
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- rec: r-base
- GNU R statistical computation and graphics system