[ 原始碼： allelecount ]
套件：liballelecount-perl（4.2.1-1）
Perl interface to NGS copy number algorithms
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings).
The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg.
This package provided the Perl interface to alleleCounter providing Sanger::CGP::AlleleCount::Genotype.
其他與 liballelecount-perl 有關的套件
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- dep: libconst-fast-perl
- facility for creating read-only scalars, arrays, and hashes
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- dep: libdevel-cover-perl
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- dep: libfile-slurp-perl
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- dep: libfile-which-perl
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- dep: libipc-system-simple-perl
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- dep: libpod-coverage-perl
- checker for comprehensiveness of perl module documentation
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- dep: libtest-fatal-perl (>= 0.013)
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- dep: libtry-tiny-perl
- module providing minimalistic try/catch
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- dep: perl
- Larry Wall's Practical Extraction and Report Language