全部搜尋項
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ 原始碼: transdecoder  ]

套件:transdecoder-doc(5.0.1-3)

transdecoder-doc 的相關連結

Screenshot

Debian 的資源:

下載原始碼套件 transdecoder

維護小組:

外部的資源:

相似套件:

find coding regions within transcripts

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

TransDecoder identifies likely coding sequences based on the following criteria:

 * a minimum length open reading frame (ORF) is found in a transcript sequence
 * a log-likelihood score similar to what is computed by the GeneID software
   is > 0.
 * the above coding score is greatest when the ORF is scored in the 1st
   reading frame as compared to scores in the other 5 reading frames.
 * if a candidate ORF is found fully encapsulated by the coordinates of
   another candidate ORF, the longer one is reported. However, a single
   transcript can report multiple ORFs (allowing for operons, chimeras, etc).
 * optional the putative peptide has a match to a Pfam domain above the noise
   cutoff score.

This package contains the documentation and sample data.

其他與 transdecoder-doc 有關的套件

  • 依賴
  • 推薦
  • 建議
  • 增強

下載 transdecoder-doc

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
all 12,021。7 kB24,953。0 kB [檔案列表]