[ 原始碼： python-cooler ]
套件：python3-cooler（0.9.1-1）
library for a sparse, compressed, binary persistent storage
Cooler is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices.
The cooler file format is an implementation of a genomic matrix data model using HDF5 as the container format. The cooler package includes a suite of command line tools and a Python API to facilitate creating, querying and manipulating cooler files.
其他與 python3-cooler 有關的套件
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-asciitree
- Draw tree structures using (ASCII or Unicode) characters
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
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- dep: python3-cytoolz
- Toolz in Cython: High performance functional utilities
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- dep: python3-h5py (>= 2.5)
- general-purpose Python interface to hdf5
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- dep: python3-multiprocess
- better multiprocessing and multithreading in Python
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pairix
- 1D/2D indexing and querying with a pair of genomic coordinates
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-pyfaidx
- efficient random access to fasta subsequences for Python 3
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-scipy (>= 1.10~)
- scientific tools for Python 3
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- dep: python3-simplejson
- simple, fast, extensible JSON encoder/decoder for Python 3.x
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- dep: python3-six
- Python 2 and 3 compatibility library
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- rec: python3-dask
- Minimal task scheduling abstraction for Python 3
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- sug: python3-pip
- Python package installer