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[ 原始碼: minia  ]

套件:minia(3.2.6-3)

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short-read biological sequence assembler

What was referred to as "next-generation" DNA sequencing up to the year 2020 delivered only "short" reads up to ~600 base pairs in length that would then have to be puzzled by random overlaps in their sequence towards a complete genome. This is the genome assembly. And there are many biological pitfalls on long stretches of low complexity regions and copy number variations and other sorts of redundancies that render this difficult.

This package provides a short-read DNA sequence assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.

The output of Minia is a set of contigs, i.e. stretches of gap-free linear overlaps of short reads. In the best possible case this is a whole chromosome.

Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).

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下載 minia

下載可用於所有硬體架構的
硬體架構 套件大小 安裝後大小 檔案
amd64 393。2 kB740。0 kB [檔案列表]
arm64 385。1 kB824。0 kB [檔案列表]
mips64el 383。2 kB843。0 kB [檔案列表]
ppc64el 393。8 kB824。0 kB [檔案列表]