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[ 原始碼: hisat2  ]

套件:hisat2(2.2.1-4 以及其他的)

hisat2 的相關連結

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graph-based alignment of short nucleotide reads to many genomes

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM).

其他與 hisat2 有關的套件

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下載 hisat2

下載可用於所有硬體架構的
硬體架構 版本 套件大小 安裝後大小 檔案
amd64 2.2.1-4+b2 3,572。5 kB14,154。0 kB [檔案列表]
arm64 2.2.1-4+b2 3,397。1 kB13,162。0 kB [檔案列表]
armel 2.2.1-4+b2 3,366。4 kB13,248。0 kB [檔案列表]
armhf 2.2.1-4+b2 3,318。1 kB11,698。0 kB [檔案列表]
i386 2.2.1-4+b2 3,489。9 kB14,726。0 kB [檔案列表]
mips64el 2.2.1-4+b2 3,470。4 kB14,428。0 kB [檔案列表]
mipsel 2.2.1-4+b2 3,648。5 kB14,840。0 kB [檔案列表]
ppc64el 2.2.1-4+b2 3,595。6 kB14,058。0 kB [檔案列表]
s390x 2.2.1-4+b2 3,193。4 kB13,676。0 kB [檔案列表]