[ 原始碼： fasta3 ]
套件：fasta3（36.3.8i.14-Nov-2020-1）
fasta3 的相關連結
Debian 的資源：
下載原始碼套件 fasta3：
- [fasta3_36.3.8i.14-Nov-2020-1.dsc]
- [fasta3_36.3.8i.14-Nov-2020.orig.tar.gz]
- [fasta3_36.3.8i.14-Nov-2020-1.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [fasta.bioch.virginia.edu]
相似套件：
tools for searching collections of biological sequences
The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.
* Protein - Protein-protein FASTA - Protein-protein Smith-Waterman (ssearch) - Global Protein-protein (Needleman-Wunsch) (ggsearch) - Global/Local protein-protein (glsearch) - Protein-protein with unordered peptides (fasts) - Protein-protein with mixed peptide sequences (fastf)
* Nucleotide - Nucleotide-Nucleotide (DNA/RNA fasta) - Ordered Nucleotides vs Nucleotide (fastm) - Un-ordered Nucleotides vs Nucleotide (fasts)
* Translated
- Translated DNA (with frameshifts, e.g. ESTs)
vs Proteins (fastx/fasty)
- Protein vs Translated DNA (with frameshifts)
(tfastx/tfasty)
- Peptides vs Translated DNA (tfasts)
* Statistical Significance - Protein vs Protein shuffle (prss) - DNA vs DNA shuffle (prss) - Translated DNA vs Protein shuffle (prfx)
* Local Duplications - Local Protein alignments (lalign) - Plot Protein alignment "dot-plot" (plalign) - Local DNA alignments (lalign) - Plot DNA alignment "dot-plot" (plalign)
This software is often used via a web service at the EBI with readily indexed reference databases at http://www.ebi.ac.uk/Tools/fasta/.
其他與 fasta3 有關的套件
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- dep: libc6 (>= 2.34)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- rec: r-base-core
- GNU R core of statistical computation and graphics system
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- sug: bedtools
- suite of utilities for comparing genomic features
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- sug: libdbd-mysql-perl
- Perl5 database interface to the MariaDB/MySQL database
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- sug: libdbi-perl
- Perl Database Interface (DBI)
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- sug: libhtml-tableextract-perl
- module for extracting the content contained in HTML tables
-
- sug: libjson-perl
- module for manipulating JSON-formatted data
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- sug: liburi-encode-perl
- Perl module to encode and decode strings to URIs
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- sug: libwww-perl
- simple and consistent interface to the world-wide web
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- sug: libxml-twig-perl
- Perl module for processing huge XML documents in tree mode
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- sug: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- sug: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: python3-mysqldb
- Python interface to MySQL