软件包：kleborate（2.4.1-3）

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外部的资源：

主页 [github.com]

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tool to screen Klebsiella genome assemblies

Kleborate is a tool to screen Klebsiella genome assemblies for:

 * MLST sequence type
 * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
 * ICEKp associated virulence loci: yersiniabactin (ybt),
   colibactin (clb)
 * virulence plasmid associated loci: salmochelin (iro), aerobactin
   (iuc), hypermucoidy (rmpA, rmpA2)
 * antimicrobial resistance genes, including quinolone resistance SNPs
   and colistin resistance truncations
 * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
   and Kaptive

其他与 kleborate 有关的软件包

依赖

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建议

增强

dep: kaptive

obtain information about K and O types for Klebsiella genome assemblies
dep: kaptive-data

reference data for kaptive for Klebsiella genome assemblies
dep: mash

fast genome and metagenome distance estimation using MinHash
dep: ncbi-blast+

next generation suite of BLAST sequence search tools
dep: python3

交互式高级面向对象语言（默认 python3 版本）
dep: python3-biopython

Python3 library for bioinformatics

下载 kleborate

下载可用于所有硬件架构的
硬件架构	软件包大小	安装后大小	文件
ppc64el	7,558.8 kB	62,170.0 kB	[文件列表]