[ 源代码： kleborate ]
软件包：kleborate（2.4.1-3）
tool to screen Klebsiella genome assemblies
Kleborate is a tool to screen Klebsiella genome assemblies for:
* MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive
其他与 kleborate 有关的软件包
|
|
|
|
-
- dep: kaptive
- obtain information about K and O types for Klebsiella genome assemblies
-
- dep: kaptive-data
- reference data for kaptive for Klebsiella genome assemblies
-
- dep: mash
- fast genome and metagenome distance estimation using MinHash
-
- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
-
- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
-
- dep: python3-biopython
- Python3 library for bioinformatics