[ 源代码： bowtie2 ]
软件包：bowtie2（2.5.4-1）
ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
其他与 bowtie2 有关的软件包
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- dep: libc6 (>= 2.38)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [除 amd64]
- GCC 支持库
- dep: libgcc-s1 (>= 3.4) [amd64]
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- dep: libstdc++6 (>= 14)
- GNU 标准 C++ 库，第3版
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- dep: perl
- 拉里 沃尔的实用报表提取语言(Perl)
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.6)
- 压缩库 - 运行时
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- sug: bowtie2-examples
- Examples for bowtie2