源码包：bioperl-run（1.7.3-11）
bioperl-run 的相关链接
Debian 的资源：
维护小组：
- Debian Med Packaging Team (QA 页面, 邮件存档)
- Charles Plessy (QA 页面)
- Andreas Tille (QA 页面)
- Étienne Mollier (QA 页面)
外部的资源：
- 主页 [metacpan.org]
本源码包构建了以下这些二进制包：
- bioperl-run
- BioPerl wrappers: scripts
- libbio-perl-run-perl
- BioPerl wrappers: modules
其他与 bioperl-run 有关的软件包
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- adep: debhelper-compat (= 13)
- 软件包暂时不可用
-
- adep: libmodule-build-perl
- framework for building and installing Perl modules
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- idep: perl
- 拉里 沃尔的实用报表提取语言(Perl)
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- idep: bioperl (>= 1.7.4)
- 用于处理计算分子生物学的 Perl 工具
-
- idep: libalgorithm-diff-perl
- module to find differences between files
-
- idep: libipc-run-perl
- Perl module for running processes
-
- idep: libio-string-perl
- Emulate IO::File interface for in-core strings
-
- idep: libxml-twig-perl
- Perl module for processing huge XML documents in tree mode
-
- idep: libfile-sort-perl
- module to sort a file or merge sort multiple files
-
- idep: libtest-most-perl
- Perl module with the most commonly needed test functions and features
-
- idep: libarray-compare-perl
- Perl module to easily compare arrays
-
- idep: libtree-dagnode-perl
- Perl (super)class for representing nodes in a tree
-
- idep: libbio-cluster-perl
- BioPerl cluster modules
-
- idep: libbio-featureio-perl
- Modules for reading, writing, and manipulating sequence features
-
- idep: libconfig-any-perl
- module to load configuration from different file formats
-
- idep: libbio-tools-run-alignment-clustalw-perl [any-amd64]
- Bioperl interface to Clustal W
-
- idep: libbio-eutilities-perl
- BioPerl interface to the Entrez Programming Utilities (E-utilities)
-
- idep: libbio-tools-run-remoteblast-perl
- Object for remote execution of the NCBI Blast via HTTP
-
- idep: amap-align
- Protein multiple alignment by sequence annealing
-
- idep: bedtools [any-amd64]
- suite of utilities for comparing genomic features
-
- idep: bedtools-test
- test data for the bedtools package
-
- idep: ncbi-blast+-legacy
- NCBI Blast legacy call script
-
- idep: clustalw [any-amd64]
- global multiple nucleotide or peptide sequence alignment
-
- idep: emboss [any-amd64 arm64 mips64el ppc64el riscv64]
- European molecular biology open software suite
-
- idep: exonerate
- generic tool for pairwise sequence comparison
-
- idep: hmmer [any-amd64 any-i386 powerpc ppc64]
- profile hidden Markov models for protein sequence analysis
-
- idep: infernal [any-amd64 any-i386]
- inference of RNA secondary structural alignments
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- idep: kalign
- Global and progressive multiple sequence alignment
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- idep: mafft
- Multiple alignment program for amino acid or nucleotide sequences
-
- idep: muscle
- Multiple alignment program of protein sequences
-
- idep: ncoils
- coiled coil secondary structure prediction
-
- idep: phyml
- Phylogenetic estimation using Maximum Likelihood
-
- idep: primer3
- tool to design flanking oligo nucleotides for DNA amplification
-
- idep: probcons
- PROBabilistic CONSistency-based multiple sequence alignment
-
- idep: python3-pybedtools [any-amd64]
- Python 3 wrapper around BEDTools for bioinformatics work
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- idep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
-
- idep: samtools [any-amd64]
- processing sequence alignments in SAM, BAM and CRAM formats
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- idep: sim4
- tool for aligning cDNA and genomic DNA
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- idep: tigr-glimmer [any-amd64 arm64 mips64el ppc64el riscv64]
- Gene detection in archea and bacteria
-
- idep: wise
- comparison of biopolymers, like DNA and protein sequences
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- idep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
-
- idep: lagan
- highly parametrizable pairwise global genome sequence aligner
-
- idep: pal2nal
- converts proteins to genomic DNA alignment
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- idep: pftools [any-amd64]
- build and search protein and DNA generalized profiles
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- idep: libwww-perl
- simple and consistent interface to the world-wide web
Download bioperl-run
| 文件 | 大小（单位：kB） | MD5 校验码 |
|---|---|---|
| bioperl-run_1.7.3-11.dsc | 3.1 kB | 9a673695b14047196a96d5606cafefd1 |
| bioperl-run_1.7.3.orig.tar.gz | 4,758.0 kB | e582f2dc591b947348670ce1479da109 |
| bioperl-run_1.7.3-11.debian.tar.xz | 19.2 kB | 50d0a107ea24fbb78c0c3f8fa63f7a81 |
- Debian 软件包源码仓库（VCS：Git）
- https://salsa.debian.org/med-team/bioperl-run.git
- Debian 软件包源码仓库（可在线浏览）
- https://salsa.debian.org/med-team/bioperl-run