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[ 源代码: libfastahack  ]

软件包:libfastahack-dev(1.0.0+dfsg-11 以及其他的)

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下载源码包 libfastahack

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library for indexing and sequence extraction from FASTA files (devel)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This is the development package containing the statically linked library and the header files.

标签: 软件开发: 函数库, 角色: 开发用函数库

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下载 libfastahack-dev

下载可用于所有硬件架构的
硬件架构 版本 软件包大小 安装后大小 文件
alpha (非官方移植版) 1.0.0+dfsg-11 29.4 kB170.0 kB [文件列表]
amd64 1.0.0+dfsg-11+b1 269.0 kB1,960.0 kB [文件列表]
arm64 1.0.0+dfsg-11+b1 26.4 kB119.0 kB [文件列表]
armel 1.0.0+dfsg-11+b1 27.3 kB110.0 kB [文件列表]
armhf 1.0.0+dfsg-11+b1 302.5 kB1,338.0 kB [文件列表]
hppa (非官方移植版) 1.0.0+dfsg-11 27.6 kB99.0 kB [文件列表]
i386 1.0.0+dfsg-11+b1 29.6 kB105.0 kB [文件列表]
ia64 (非官方移植版) 1.0.0+dfsg-11 33.3 kB165.0 kB [文件列表]
m68k (非官方移植版) 1.0.0+dfsg-11 26.3 kB100.0 kB [文件列表]
mips64el 1.0.0+dfsg-11+b1 29.4 kB141.0 kB [文件列表]
ppc64 (非官方移植版) 1.0.0+dfsg-11 28.0 kB125.0 kB [文件列表]
ppc64el 1.0.0+dfsg-11+b1 28.5 kB125.0 kB [文件列表]
riscv64 1.0.0+dfsg-11+b1 82.2 kB721.0 kB [文件列表]
s390x 1.0.0+dfsg-11+b1 27.8 kB122.0 kB [文件列表]
sh4 (非官方移植版) 1.0.0+dfsg-11 29.9 kB97.0 kB [文件列表]
sparc64 (非官方移植版) 1.0.0+dfsg-11 23.5 kB111.0 kB [文件列表]
x32 (非官方移植版) 1.0.0+dfsg-11 27.7 kB102.0 kB [文件列表]