[ 源代码： r-cran-spp ]
软件包：r-cran-spp（1.16.0-2 以及其他的）
GNU R ChIP-seq processing pipeline
R package for anlaysis of ChIP-seq and other functional sequencing data
* Assess overall DNA-binding signals in the data and select appropriate quality of tag alignment. * Discard or restrict positions with abnormally high number of tags. * Calculate genome-wide profiles of smoothed tag density and save them in WIG files for viewing in other browsers. * Calculate genome-wide profiles providing conservative statistical estimates of fold enrichment ratios along the genome. These can be exported for browser viewing, or thresholded to determine regions of significant enrichment/depletion. * Determine statistically significant point binding positions * Assess whether the set of point binding positions detected at a current sequencing depth meets saturation criteria, and if does not, estimate what sequencing depth would be required to do so.
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- dep: libbz2-1.0
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同时作为一个虚包由这些包填实： libc6-udeb
- dep: libc6 (>= 2.29) [除 alpha, ia64, riscv64, sh4, sparc64]
- dep: libc6 (>= 2.31) [sh4]
- dep: libc6 (>= 2.4) [sparc64]
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- dep: libc6.1 (>= 2.29) [alpha]
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同时作为一个虚包由这些包填实： libc6.1-udeb
- dep: libc6.1 (>= 2.31) [ia64]
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- dep: libgcc-s1 (>= 3.0) [除 alpha, hppa, ia64, riscv64, sh4, sparc64]
- GCC 支持库
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 支持库
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- dep: libgcc1 (>= 1:3.4) [sparc64]
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- dep: libstdc++6 (>= 13.1) [riscv64]
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- dep: libunwind8 [ia64]
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- dep: r-api-3.5 [sparc64]
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- dep: r-api-4.0 [除 sparc64]
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- dep: r-base-core (>= 3.5.1-1) [sparc64]
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- dep: r-base-core (>= 4.0.2-1) [除 riscv64, sh4, sparc64]
- dep: r-base-core (>= 4.1.1-2) [sh4]
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- dep: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-cran-bh (>= 1.66) [除 sparc64]
- (Virtual) GNU R package to provide BH
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- dep: r-cran-catools
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- dep: r-cran-rcpp
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- dep: zlib1g (>= 1:1.1.4)
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下载 r-cran-spp
| 硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|---|
| alpha （非官方移植版） | 1.16.0-2 | 316.0 kB | 473.0 kB | [文件列表] |
| amd64 | 1.16.0-2 | 315.3 kB | 453.0 kB | [文件列表] |
| arm64 | 1.16.0-2 | 309.7 kB | 425.0 kB | [文件列表] |
| hppa （非官方移植版） | 1.16.0-2 | 320.3 kB | 461.0 kB | [文件列表] |
| ia64 （非官方移植版） | 1.16.0-2 | 332.4 kB | 597.0 kB | [文件列表] |
| mips64el | 1.16.0-2 | 308.7 kB | 452.0 kB | [文件列表] |
| ppc64 （非官方移植版） | 1.16.0-2 | 316.9 kB | 499.0 kB | [文件列表] |
| ppc64el | 1.16.0-2 | 317.2 kB | 497.0 kB | [文件列表] |
| riscv64 | 1.16.0-2+b1 | 312.3 kB | 401.0 kB | [文件列表] |
| s390x | 1.16.0-2 | 311.0 kB | 444.0 kB | [文件列表] |
| sh4 （非官方移植版） | 1.16.0-2 | 332.8 kB | 439.0 kB | [文件列表] |
| sparc64 （非官方移植版） | 1.15.5-1 | 307.6 kB | 431.0 kB | [文件列表] |
| x32 （非官方移植版） | 1.16.0-2 | 316.0 kB | 441.0 kB | [文件列表] |