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[ 源代码： seqtools  ]

软件包：dotter（4.44.1+dfsg-7.1 以及其他的）

dotter 的相关链接

Screenshot

Debian 的资源：

下载源码包 seqtools：

维护小组：

外部的资源：

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detailed comparison of two genomic sequences

Dotter is a graphical dot-matrix program for detailed comparison of two sequences. 

 * Every residue in one sequence is compared to every residue in the
   other, and a matrix of scores is calculated.
 * One sequence is plotted on the x-axis and the other on the y-axis.
 * Noise is filtered out so that alignments appear as diagonal lines.
 * Pairwise scores are averaged over a sliding window to make the score
   matrix more intelligible.
 * The averaged score matrix forms a three-dimensional landscape,
   with the two sequences in two dimensions and the height of the
   peaks in the third. This landscape is projected onto two
   dimensions using a grey-scale image - the darker grey of a peak,
   the higher the score is.
 * The contrast and threshold of the grey-scale image can be adjusted
   interactively, without having to recalculate the score matrix.
 * An Alignment Tool is provided to examine the sequence alignment that
   the grey-scale image represents.
 * Known high-scoring pairs can be loaded from a GFF file and overlaid
   onto the plot.
 * Gene models can be loaded from GFF and displayed alongside the
   relevant axis.
 * Compare a sequence against itself to find internal repeats.
 * Find overlaps between multiple sequences by making a dot-plot of all
   sequences versus themselves.
 * Run Dotter in batch mode to create large, time-consuming dot-plots as
   a background process.

标签: 界面工具箱: GTK

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下载 dotter

下载可用于所有硬件架构的
硬件架构 版本 软件包大小 安装后大小 文件
alpha （非官方移植版） 4.44.1+dfsg-7.1 591.6 kB840.0 kB [文件列表]
amd64 4.44.1+dfsg-7.1+b1 596.6 kB805.0 kB [文件列表]
arm64 4.44.1+dfsg-7.1+b1 584.3 kB837.0 kB [文件列表]
armel 4.44.1+dfsg-7.1+b1 576.7 kB759.0 kB [文件列表]
armhf 4.44.1+dfsg-7.1+b1 577.8 kB699.0 kB [文件列表]
hppa （非官方移植版） 4.44.1+dfsg-7.1 593.3 kB795.0 kB [文件列表]
i386 4.44.1+dfsg-7.1+b1 604.0 kB835.0 kB [文件列表]
ia64 （非官方移植版） 4.44.1+dfsg-7.1 621.8 kB1,052.0 kB [文件列表]
m68k （非官方移植版） 4.44.1+dfsg-7.1 592.5 kB810.0 kB [文件列表]
mips64el 4.44.1+dfsg-7.1+b1 597.7 kB924.0 kB [文件列表]
ppc64 （非官方移植版） 4.44.1+dfsg-7.1 602.2 kB964.0 kB [文件列表]
ppc64el 4.44.1+dfsg-7.1+b1 602.2 kB901.0 kB [文件列表]
riscv64 4.44.1+dfsg-7.1+b1 595.1 kB757.0 kB [文件列表]
s390x 4.44.1+dfsg-7.1+b1 592.8 kB825.0 kB [文件列表]
sh4 （非官方移植版） 4.44.1+dfsg-7.1 607.6 kB836.0 kB [文件列表]
sparc64 （非官方移植版） 4.44.1+dfsg-7.1 580.2 kB1,554.0 kB [文件列表]
x32 （非官方移植版） 4.44.1+dfsg-7.1 596.7 kB786.0 kB [文件列表]