[ 源代码: mapsembler2 ]
软件包:mapsembler2(2.2.4+dfsg-3 以及其他的)
mapsembler2 的相关链接
Debian 的资源:
下载源码包 mapsembler2:
- [mapsembler2_2.2.4+dfsg-3.dsc]
- [mapsembler2_2.2.4+dfsg.orig.tar.xz]
- [mapsembler2_2.2.4+dfsg-3.debian.tar.xz]
维护小组:
外部的资源:
- 主页 [colibread.inria.fr]
相似软件包:
bioinformatics targeted assembly software
Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters).
It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.
Mapsembler2 may be used for (not limited to):
- Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced. - Checks if a gene (input as starter) has an homolog in a set of reads - Checks if a known enzyme is present in a metagenomic NGS read set. - Enrich unmappable reads by extending them, possibly making them mappable - Checks what happens at the extremities of a contig - Remove contaminants or symbiont reads from a read set
其他与 mapsembler2 有关的软件包
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- dep: bc
- GNU bc 任意精度的计算语言
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- dep: libc6 (>= 2.27)
- GNU C 语言运行库:共享库
同时作为一个虚包由这些包填实: libc6-udeb
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- dep: libgcc1 (>= 1:3.0) [amd64, arm64]
- GCC 支持库
- dep: libgcc1 (>= 1:3.5) [armhf]
- dep: libgcc1 (>= 1:4.2) [i386]
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP(GOMP)支持库
-
- dep: libhdf5-103
- Hierarchical Data Format 5 (HDF5) - runtime files - serial version
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- dep: libstdc++6 (>= 5.2)
- GNU 标准 C++ 库,第3版
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- dep: zlib1g (>= 1:1.2.3.4)
- 压缩库 - 运行时