软件包:pdb2pqr(2.1.1+dfsg-5)
pdb2pqr 的相关链接
Debian 的资源:
下载源码包 pdb2pqr:
维护小组:
- Debian Med Packaging Team (QA 页面, 邮件存档)
- Steffen Moeller (QA 页面)
- Manuel Prinz (QA 页面)
- Andreas Tille (QA 页面)
外部的资源:
- 主页 [www.cgl.ucsf.edu]
相似软件包:
Preparation of protein structures for electrostatics calculations
PDB2PQR is a Python software package that automates many of the common tasks of preparing structures for continuum electrostatics calculations. It thus provides a platform-independent utility for converting protein files in PDB format to PQR format. These tasks include:
* Adding a limited number of missing heavy atoms to biomolecular structures * Determining side-chain pKas * Placing missing hydrogens * Optimizing the protein for favorable hydrogen bonding * Assigning charge and radius parameters from a variety of force fields
This package also includes PropKa, a tool to modify the protonation state of protein structures in the Protein Data Bank (PDB) format to match a given pKa value. It can also be used to refine NMR structures, which often yield inaccurate pKa values for some residues.
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