软件包：salmon（1.4.0+ds1-1 以及其他的）
wicked-fast transcript quantification from RNA-seq data
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves is accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many different pipelines. For example, you can choose to make use of the lightweight alignments by providing Salmon with raw sequencing reads, or, if it is more convenient, you can provide Salmon with regular alignments (e.g. computed with your favorite aligner), and it will use the same wicked-fast, state-of-the-art inference algorithm to estimate transcript-level abundances for your experiment.
其他与 salmon 有关的软件包
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- dep: libboost-filesystem1.74.0 (>= 1.74.0)
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- Boost.Iostreams Library
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- dep: libboost-program-options1.74.0 (>= 1.74.0)
- program options library for C++
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- dep: libc6 (>= 2.29)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.4) [amd64]
- GCC 支持库
- dep: libgcc-s1 (>= 4.5) [arm64]
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- dep: libjemalloc2 (>= 5.0.0)
- general-purpose scalable concurrent malloc(3) implementation
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- dep: libjs-sphinxdoc (>= 2.4.3-5~)
- JavaScript support for Sphinx documentation
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- dep: libstaden-read14 (>= 1.14.12)
- Staden library for reading and writing DNA sequencing results
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- dep: libstdc++6 (>= 9)
- GNU 标准 C++ 库，第3版
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- dep: libtbb2 (>= 2017~U7) [amd64]
- parallelism library for C++ - runtime files
- dep: libtbb2 (>= 2020.3) [arm64]
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- dep: sphinx-rtd-theme-common (>= 0.5.1+dfsg)
- sphinx theme from readthedocs.org (common files)
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时