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[ 源代码: clonalframe  ]

软件包:clonalframe(1.2-10 以及其他的)

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inference of bacterial microevolution using multilocus sequence data

ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance.

ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame.

标签: 实做语言: C++, 角色: 程序

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下载可用于所有硬件架构的
硬件架构 版本 软件包大小 安装后大小 文件
amd64 1.2-10+b1 49.4 kB136.0 kB [文件列表]
arm64 1.2-10+b1 44.6 kB120.0 kB [文件列表]
armel 1.2-10+b1 42.7 kB115.0 kB [文件列表]
armhf 1.2-10+b1 41.5 kB87.0 kB [文件列表]
i386 1.2-10+b1 52.8 kB131.0 kB [文件列表]
mips64el 1.2-10+b1 54.1 kB164.0 kB [文件列表]
mipsel 1.2-10+b1 53.0 kB150.0 kB [文件列表]
ppc64el 1.2-10+b1 53.2 kB152.0 kB [文件列表]
s390x 1.2-10+b1 47.0 kB136.0 kB [文件列表]