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[ 源代码: physamp  ]

软件包:physamp(1.1.0-2)

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sample sequence alignment corresponding to phylogeny

The PhySamp package currently contains two programs: bppphysamp, which samples sequences according to their similarity, and bppalnoptim, which samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The bppalnoptim program has three running modes:

 * Interactive: the user will be iteratively proposed a set of choices
   for sequence removal, with their corresponding site gains. The
   procedure stops when the user does not want to remove more sequences,
   and the resulting filtered alignment is written.
 * Automatic: the user enters an a priori criterion for stopping
   the filtering procedure (for instance a minimum number of
   sequences to keep).
 * Diagnostic: this mode allows one to plot the trade-off curve, by
   showing the site gain as a function of the number of removed
   sequences.

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下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 182.9 kB1,778.0 kB [文件列表]
arm64 175.2 kB1,766.0 kB [文件列表]
armel 169.9 kB1,716.0 kB [文件列表]
armhf 170.8 kB1,660.0 kB [文件列表]
i386 188.5 kB1,764.0 kB [文件列表]
mips64el 178.3 kB1,832.0 kB [文件列表]
mipsel 178.5 kB1,808.0 kB [文件列表]
ppc64el 186.2 kB1,890.0 kB [文件列表]
s390x 174.6 kB1,782.0 kB [文件列表]